Publications Overview of the Department of CD Spectroscopy of Nucleic Acids

2012

• Vorlickova, M., Tomasko, M., Sagi, AJ., Bednarova, K., Sagi, J. (2012), 8-Oxoguanine in a quadruplex of the human telomere DNA sequence, FEBS JOURNAL 279, 29-39 [AIS=1.142, IF=3.129 H]

2011

• Renciuk, D., Kypr, J., Vorlickova, M. (2011), CGG Repeats Associated with Fragile X Chromosome Form Left-Handed Z-DNA Structure, BIOPOLYMERS 95, 174-181 [AIS=0.875, IF=2.605 VH]

2010

• Sagi, J., Renciuk, D., Tomasko, M., Vorlickova, M. (2010), Quadruplexes of Human Telomere DNA Analogs Designed to Contain G:A:G:A, G:G:A:A, and A:A:A:A Tetrads, BIOPOLYMERS 93, 880-886 [AIS=0.875, IF=2.605 VH]
• Skolakova, P., Bednarova, K., Vorlickova, M., Sagi, J. (2010), Quadruplexes of human telomere dG(3)(TTAG(3))(3) sequences containing guanine abasic sites, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 399, 203-208 [AIS=0.905, IF=2.548 H]

2009

• Kypr, J., Kejnovska, I., Renciuk, D., Vorlickova, M. (2009), Circular dichroism and conformational polymorphism of DNA, NUCLEIC ACIDS RESEARCH 37, 1713-1725 [AIS=3, IF=7.48 VH]
• Renciuk, D., Zemanek, M., Kejnovska, I., Vorlickova, M. (2009), Quadruplex-forming properties of FRAXA (CGG) repeats interrupted by (AGG) triplets, BIOCHIMIE 91, 416-422 [AIS=1.269, IF=3.897 VH]
• Tomasko, M., Vorlickova, M., Sagi, J. (2009), Substitution of adenine for guanine in the quadruplex-forming human telomere DNA sequence G(3)(T(2)AG(3))(3), BIOCHIMIE 91, 171-179 [AIS=1.269, IF=3.897 VH]
• Renciuk, D., Kejnovska, I., Skolakova, P., Bednarova, K., Motlova, J., Vorlickova, M. (2009), Arrangements of human telomere DNA quadruplex in physiologically relevant K+ solutions, NUCLEIC ACIDS RESEARCH 37, 6625-6634 [AIS=3.001, IF=7.479 VH]
• Doneux, T., Bouffier, L., Mello, LV., Rigden, DJ., Kejnovska, I., Fernig, DG., Higgins, SJ., Nichols, RJ. (2009), Molecular Dynamics and Electrochemical Investigations of a pH-Responsive Peptide Monolayer, JOURNAL OF PHYSICAL CHEMISTRY C 113, 6792-6799 [AIS=1.284, IF=4.224 H]

2008

• Vondruskova, J., Kypr, J., Kejnovska, I., Fialova, M., Vorlickova, M. (2008), Guanine quadruplex formation by RNA/DNA hybrid analogs of Oxytricha telomere G(4)T(4)G(4) fragment, BIOPOLYMERS 89, 797-806 [AIS=0.871, IF=2.605 VH]
• Vondruskova, J., Kypr, J., Kejnovska, I., Fialova, M., Vorlickova, M. (2008), Role of loops in the guanine quadruplex formation by DNA/RNA hybrid analogs of G(4)T(4)G(4), INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES 43, 463-467 [AIS=0.583, IF=2.366 VH]
• Hrabcova, I., Kypr, J. (2008), The longest (A+T) and (G+C) blocks in the human and other genomes, JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 25, 337-345 [AIS=0.32, IF=1.124 VH]

2007

• Kypr, J., Kejnovska, I., Vorlickova, M. (2007), Conformations of DNA strands containing GAGT, GACA, or GAGC Tetranucleotide repeats, BIOPOLYMERS 87, 218-224 [AIS=0.871, IF=2.605 VH]
• Vorlickova, M., Bednarova, K., Kejnovska, I., Kypr, J. (2007), Intramolecular and intermolecular guanine quadruplexes of DNA in aqueous salt and ethanol solutions, BIOPOLYMERS 86, 1-10 [AIS=0.871, IF=2.605 VH]
• Kejnovska, I., Kypr, J., Vondruskova, J., Vorlickova, M. (2007), Towards a better understanding of the unusual conformations of the alternating guanine-adenine repeat strands of DNA, BIOPOLYMERS 85, 19-27 [AIS=0.871, IF=2.605 VH]
• Kejnovska, I., Kypr, J., Vorlickova, M. (2007), Oligo(dT) is not a correct native PAGE marker for single-stranded DNA, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 353, 776-779 [AIS=0.905, IF=2.548 VH]
• Nejedly, K., Chladkova, J., Kypr, J. (2007), Photochemical probing of the B-A conformational transition in a linearized pUC19 DNA and its polylinker region, BIOPHYSICAL CHEMISTRY 125, 237-246 [AIS=0.685, IF=2.276 VH]
• Vondruskova, J., Parizkova, N., Kypr, J. (2007), Factors influencing DNA expansion in the course of polymerase chain reaction, NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS 26, 65-82 [AIS=0.221, IF=0.768 VH]

2006

• Vorlickova, M., Bednarova, K., Kypr, J. (2006), Ethanol is a better inducer of DNA guanine tetraplexes than potassium cations, BIOPOLYMERS 82, 253-260 [AIS=0.871, IF=2.605 VH]
• Fialova, M., Kypr, J., Vorlickova, M. (2006), The thrombin binding aptamer GGTTGGTGTGGTTGG forms a bimolecular guanine tetraplex, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 344, 50-54 [AIS=0.905, IF=2.548 VH]

2005

• Nejedly, K., Chladkova, J., Vorlickova, M., Hrabcova, I., Kypr, J. (2005), Mapping the B-A conformational transition along plasmid DNA, NUCLEIC ACIDS RESEARCH 33 [AIS=3, IF=7.48 VH]
• Hanzalek, P., Kypr, J. (2005), DNA in phosphorus atom representation: the heteronomous double helices of poly(dA)center dot poly(dT) and poly(dG)center dot poly(dC) and simulation of the yeast genome and of a human chromosome DNA, JOURNAL OF THEORETICAL BIOLOGY 232, 83-91 [AIS=0.986, IF=2.574 VH]
• Zemanek, M., Kypr, J., Vorlickova, M. (2005), Conformational properties of DNA containing (CCA)(n) and (TGG)(n) trinucleotide repeats, INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES 36, 23-32 [AIS=0.583, IF=2.366 VH]
• Necas, M., Dostal, J., Kejnovska, I., Vorlickova, M., Slavik, J. (2005), Molecular and crystal structures of (+)-homochelidonine, (+)-chelamine, and (-)-norchelidonine, JOURNAL OF MOLECULAR STRUCTURE 734, 1-6 [AIS=0.368, IF=1.551 H]
• Vorlickova, M., Chladkova, J., Kejnovska, I., Fialova, M., Kypr, J. (2005), Guanine tetraplex topology of human telomere DNA is governed by the number of (TTAGGG) repeats, NUCLEIC ACIDS RESEARCH 33, 5851-5860 [AIS=3, IF=7.48 VH]

2004

• Fojtik, P., Kejnovska, I., Vorlickova, M. (2004), The guanine-rich fragile X chromosome repeats are reluctant to form tetraplexes, NUCLEIC ACIDS RESEARCH 32, 298-306 [AIS=3, IF=7.48 VH]
• Kejnovsky, E., Nejedly, K., Kypr, J. (2004), Factors influencing resistance of UV-irradiated DNA to the restriction endonuclease cleavage, INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES 34, 213-222 [AIS=0.583, IF=2.366 VH]

2003

• Kejnovska, I., Kypr, J., Vorlickova, M. (2003), Circular dichroism spectroscopy of conformers of (guanine plus adenine) repeat strands of DNA, CHIRALITY 15, 584-592 [AIS=0.67, IF=2.677 VH]
• Hrabcova, I., Kypr, J. (2003), Genomic occurrence of microsatellites containing integral and non-integral repeat numbers, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 300, 824-831 [AIS=0.905, IF=2.548 VH]
• Kypr, J., Kejnovska, I., Vorlickova, M. (2003), DNA homoduplexes containing no pyrimidine nucleotide, EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 32, 154-158 [AIS=0.836, IF=2.437 VH]
• Reichova, N., Kypr, J. (2003), Expansion during PCR of short single-stranded DNA fragments carrying nonselfcomplementary dinucleotide or trinucleotide repeats, MOLECULAR BIOLOGY REPORTS 30, 155-163 [AIS=0.4, IF=2.04 VH]

2001

• Nejedly, K., Kittner, R., Pospisilova, S., Kypr, J. (2001), Crosslinking of the complementary strands of DNA by UV light: dependence on the oligonucleotide composition of the UV irradiated DNA, BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION 1517, 365-375 [AIS=, IF= VH]
• Fojtik, P., Vorlickova, M. (2001), The fragile X chromosome (GCC) repeat folds into a DNA tetraplex at neutral pH, NUCLEIC ACIDS RESEARCH 29, 4684-4690 [AIS=3, IF=7.48 VH]
• Stefl, R., Trantirek, L., Vorlickova, M., Koca, J., Sklenar, V., Kypr, J. (2001), A-like guanine-guanine stacking in the aqueous DNA duplex of d(GGGGCCCC), JOURNAL OF MOLECULAR BIOLOGY 307, 513-524 [AIS=2.051, IF=3.871 VH]
• Nejedly, K., Kittner, R., Kypr, J. (2001), Genomic DNA regions whose complementary strands are prone to UV light-induced crosslinking, ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS 388, 216-224 [AIS=0.975, IF=3.046 VH]
• Kypr, J., Vorlickova, M. (2001), Dimethylsulfoxide-stabilized conformer of guanine-adenine repeat strand of DNA, BIOPOLYMERS 62, 81-84 [AIS=0.871, IF=2.605 VH]
• Haring, D., Kypr, J. (2001), No isochores in the human chromosomes 21 and 22?, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 280, 567-573 [AIS=0.905, IF=2.548 VH]
• Hanzalek, P., Kypr, J. (2001), Tertiary structures of the Escherichia coli and human chromosome 21 molecules of DNA, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 283, 219-223 [AIS=0.905, IF=2.548 VH]
• Vorlickova, M., Kejnovska, I., Tumova, M., Kypr, J. (2001), Conformational properties of DNA fragments containing GAC trinucleotide repeats associated with skeletal displasias, EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 30, 179-185 [AIS=0.836, IF=2.437 VH]
• Kypr, J., Fialova, M., Chladkova, J., Tumova, M., Vorlickova, M. (2001), Conserved guanine-guanine stacking in tetraplex and duplex DNA, EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 30, 555-558 [AIS=0.836, IF=2.437 VH]
• Haring, D., Kypr, J. (2001), Mosaic structure of the DNA molecules of the human chromosomes 21 and 22, MOLECULAR BIOLOGY REPORTS 28, 9-17 [AIS=0.4, IF=2.04 VH]
• Kejnovska, I., Tumova, M., Vorlickova, M. (2001), (CGA)(4): parallel, anti-parallel, right-handed and left-handed homoduplexes of a trinucleotide repeat DNA, BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS 1527, 73-80 [AIS=0.882, IF=2.958 VH]

2000

• Simonsson, T., Pribylova, M., Vorlickova, M. (2000), A nuclease hypersensitive element in the human c-myc promoter adopts several distinct i-tetraplex structures, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 278, 158-166 [AIS=0.905, IF=2.548 H]
• Haring, D., Kypr, J. (2000), Escherichia coli genome is composed of two distinct types of nucleotide sequences, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 272, 571-575 [AIS=0.905, IF=2.548 VH]
• Neugebauerova, S., Kypr, J. (2000), Invariant and variable base stacking geometries in B-DNA and A-DNA, JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 18, 73-81 [AIS=0.32, IF=1.124 VH]
• Trantirek, L., Stefl, R., Vorlickova, M., Koca, J., Sklenar, V., Kypr, J. (2000), An A-type double helix of DNA having B-type puckering of the deoxyribose rings, JOURNAL OF MOLECULAR BIOLOGY 297, 907-922 [AIS=2.051, IF=3.871 VH]